Udp-N-Acetylmuramate-L-Alanine Ligase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-319   PHE-320  16.2 16.4 -8.3 1.2 135.4 132.8 -75.8
 PHE-320   GLN-321  13.6 13.7 2.7 -1.3 69.2 67.0 12.5
 GLN-321   GLY-322  11.9 12.0 2.7 3.1 71.5 73.2 6.6
 GLY-322   ALA-323  9.1 9.1 -10.4 5.1 161.9 155.3 -53.9
 ALA-323   GLY-324  7.8 8.0 2.0 6.3 72.5 66.1 38.8
 GLY-324   ARG-325  5.4 5.4 -12.9 -5.8 79.2 72.1 72.6
 ARG-325   ARG-326  1.7 1.8 15.5 0.5 147.5 147.4 -126.3
 ARG-326   PHE-327  2.7 3.0 -7.2 6.5 37.8 48.1 70.9
 PHE-327   ASP-328  1.7 1.8 -0.4 11.7 107.7 113.0 77.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-355   THR-356  6.9 6.7 -13.2 5.7 75.8 79.1 17.0
 THR-356   ILE-357  4.3 4.1 1.8 -7.8 59.5 54.1 -51.2
 ILE-357   LYS-358  6.5 6.4 5.7 3.4 24.3 24.0 79.6
 LYS-358   ALA-359  5.2 5.0 -7.7 7.8 94.1 91.2 -14.4
 ALA-359   ALA-360  1.5 1.3 -3.1 1.4 85.3 89.3 0.9
 ALA-360   ARG-361  4.1 4.3 -10.4 10.3 149.6 153.4 -4.2
 ARG-361   GLU-362  5.7 5.9 -6.4 4.9 134.3 131.7 -13.8
 GLU-362   GLY-363  3.0 3.1 0.6 -10.1 100.6 98.3 11.8
 GLY-363   TRP-364  5.2 5.4 31.7 -31.0 86.7 93.2 -20.8
 TRP-364   GLY-365  8.3 8.4 70.9 -36.3 25.8 40.7 255.8
 GLY-365   ASP-366  8.9 9.6 -35.1 -23.2 92.5 90.0 -25.5
 ASP-366   LYS-367  12.6 12.6 44.9 3.0 146.5 147.1 -343.4
 LYS-367   ARG-368  13.6 13.7 3.6 -6.3 120.5 123.2 64.7
 ARG-368   ILE-369  13.6 14.0 -7.9 -2.5 46.4 46.1 93.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees