Tumor Necrosis Factor Receptor Superfamily Member 4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-110   ALA-111  5.6 5.3 -3.8 6.9 109.8 105.1 11.5
 ALA-111   GLY-112  5.9 5.6 -0.8 0.0 34.8 36.3 6.3
 GLY-112   THR-113  5.8 5.6 -5.0 4.9 57.8 62.4 13.7
 THR-113   GLN-114  2.2 2.0 -4.0 2.7 132.8 136.5 19.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-124   CYS-125  6.8 6.9 8.4 -0.6 58.7 56.4 42.2
 CYS-125   ALA-126  3.3 3.3 -6.0 6.4 52.9 54.0 -9.8
 ALA-126   PRO-127  2.6 2.9 -1.1 3.1 116.2 116.2 43.7
 PRO-127   CYS-128  4.1 4.2 -8.8 8.0 128.7 127.5 6.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees