Glutamate Receptor 4,Glutamate Receptor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-103   SER-104  4.3 4.1 5.2 -8.7 44.7 43.1 -16.6
 SER-104   LEU-105  3.6 3.5 -0.1 -7.0 76.9 75.3 148.7
 LEU-105   GLY-106  3.1 3.0 -8.5 9.2 141.5 140.4 -29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-213   LYS-214  6.3 6.1 -1.9 0.0 68.4 67.0 31.1
 LYS-214   GLY-215  2.9 2.7 5.4 -3.0 38.2 40.4 -9.0
 GLY-215   TYR-216  2.5 2.5 -5.1 0.3 84.9 86.8 32.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-250   TRP-251  4.7 4.8 -10.8 10.0 101.2 98.5 8.8
 TRP-251   TYR-252  2.5 2.7 -1.3 -7.4 36.8 35.3 23.0
 TYR-252   ASP-253  1.8 1.9 5.7 0.5 161.5 163.5 -97.8
 ASP-253   LYS-254  1.0 0.4 -7.4 -23.6 72.8 49.9 130.3
 LYS-254   GLY-255  4.5 3.6 47.9 -11.3 88.3 66.0 113.6
 GLY-255   GLU-256  5.7 5.6 6.4 -1.5 145.2 135.1 -33.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees