Putative Sam-Dependent RNA Methyltransferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-200   ASN-201  2.0 1.8 -14.5 12.3 48.5 46.4 46.3
 ASN-201   ARG-202  1.5 1.7 -5.5 2.9 32.2 33.1 11.5
 ARG-202   LEU-203  2.1 2.2 -6.0 3.1 61.2 60.1 50.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-355   ARG-356  11.5 11.6 0.0 -3.7 130.7 127.8 74.8
 ARG-356   GLY-357  8.3 8.3 20.1 -35.2 135.0 132.3 137.7
 GLY-357   GLN-358  7.1 6.8 3.0 5.7 101.4 106.5 -16.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-362   PRO-363  0.8 0.9 1.1 -1.8 66.9 68.4 -3.2
 PRO-363   VAL-364  2.5 2.3 -3.1 7.3 106.3 106.9 28.2
 VAL-364   LEU-365  5.8 5.7 3.1 0.6 41.0 39.9 24.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-369   GLU-370  12.3 12.4 1.2 0.3 67.8 64.1 34.6
 GLU-370   THR-371  11.3 11.5 -13.1 13.8 112.0 115.7 -1.7
 THR-371   HIS-372  7.7 7.9 -6.0 4.4 164.2 162.8 -23.6
 HIS-372   TYR-373  9.2 9.2 -1.1 7.1 121.9 119.2 12.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees