Glycerol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-122   ASP-123  6.2 6.1 4.0 3.9 64.5 66.6 4.4
 ASP-123   ALA-124  2.9 3.0 4.4 4.9 10.4 15.7 71.5
 ALA-124   PRO-125  4.6 4.9 -7.4 -0.6 108.8 108.4 -39.3
 PRO-125   THR-126  5.3 5.3 -0.2 -5.0 127.7 129.1 -30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-148   PRO-149  4.1 4.3 9.3 -1.9 86.4 86.7 -5.0
 PRO-149   ASP-150  7.3 7.3 0.0 0.7 90.6 86.8 -1.8
 ASP-150   LEU-151  10.7 10.7 2.4 -1.0 24.9 24.9 -4.8
 LEU-151   VAL-152  12.0 12.0 0.9 -1.6 51.3 50.1 3.1
 VAL-152   LEU-153  10.2 10.2 2.0 -2.6 39.1 41.4 -8.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees