Dna-Directed RNA Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-461
ASP-462
18.8
20.7
11.5
113.0
38.0
38.6
194.8
ASP-462
ALA-463
18.3
19.7
-11.8
55.0
139.2
149.1
37.8
ALA-463
LEU-464
18.9
20.6
-177.6
-24.1
78.2
101.4
-60.6
LEU-464
GLY-465
20.0
21.2
-24.2
142.1
131.2
37.3
48.6
GLY-465
PHE-466
19.9
22.2
49.5
84.9
126.0
120.6
-163.9
PHE-466
ILE-467
20.1
18.8
-54.6
-109.5
37.5
40.3
237.3
ILE-467
ARG-468
19.0
17.9
15.5
-110.9
127.5
90.4
-231.9
ARG-468
THR-469
18.0
14.8
173.8
-139.3
90.1
149.3
251.3
THR-469
PRO-470
14.3
12.6
27.3
11.5
142.1
79.2
-16.6
PRO-470
TYR-471
12.7
11.2
-59.8
-19.0
104.5
73.5
-105.1
TYR-471
ARG-472
10.8
7.6
17.0
38.0
101.5
80.7
-28.5
ARG-472
ARG-473
7.3
7.1
-25.7
13.6
103.0
122.5
-20.7
ARG-473
VAL-474
6.9
6.1
-43.9
49.9
129.8
61.9
3.2
VAL-474
LYS-475
6.1
6.7
42.9
-135.8
93.9
48.4
155.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-484
TYR-485
12.9
9.8
140.4
26.3
116.1
75.2
-36.5
TYR-485
MET-486
11.8
11.6
86.1
-57.2
95.7
138.8
-31.4
MET-486
THR-487
8.1
10.4
19.1
59.6
73.3
80.3
3.4
THR-487
ALA-488
6.5
12.3
176.9
-45.4
75.9
56.5
150.4
ALA-488
SER-489
2.8
13.1
-107.3
-105.8
130.1
55.5
5.6
SER-489
GLU-490
4.1
12.0
-89.4
-152.7
177.6
82.0
165.7
GLU-490
GLU-491
4.4
8.7
-132.8
-2.4
116.8
146.6
-209.0
GLU-491
ASP-492
2.5
7.8
-170.5
36.1
153.7
94.5
-123.5
ASP-492
ARG-493
1.4
9.4
-105.9
-75.8
137.1
62.0
299.5
ARG-493
TYR-494
2.3
6.8
-134.0
-76.1
120.8
114.0
-208.6
TYR-494
THR-495
2.9
4.1
29.9
135.6
40.4
28.8
240.0
THR-495
ILE-496
3.1
4.3
-68.8
160.5
69.9
127.7
-30.6
ILE-496
ALA-497
5.5
2.3
121.1
-41.9
105.2
14.4
-294.6
ALA-497
GLN-498
8.0
1.0
7.5
74.1
71.4
52.2
156.4
GLN-498
ALA-499
11.5
2.0
98.4
-152.2
120.5
68.6
1.4
ALA-499
ASN-500
13.6
3.6
48.0
76.0
157.1
26.2
87.1
ASN-500
THR-501
13.0
1.9
-4.7
51.1
69.4
88.2
45.9
THR-501
PRO-502
12.0
2.4
138.4
-95.3
59.3
75.2
68.1
PRO-502
LEU-503
9.4
5.9
108.2
-95.4
94.8
142.0
-23.7
LEU-503
GLU-504
11.4
9.1
38.4
2.8
58.4
65.3
67.2
GLU-504
GLY-505
9.5
12.9
-180.0
-36.2
89.8
51.0
-169.5
GLY-505
ASP-506
11.8
14.9
-47.3
-0.4
82.8
45.1
-214.0
ASP-506
ARG-507
9.6
13.3
-76.9
-58.5
85.3
65.6
260.3
ARG-507
ILE-508
6.1
11.3
45.9
9.5
89.2
49.1
-21.8
ILE-508
ALA-509
5.4
9.0
30.3
22.5
138.1
56.8
-99.9
ALA-509
THR-510
4.9
10.8
171.3
13.0
110.0
75.0
106.6
THR-510
ASP-511
6.9
10.1
43.1
34.2
169.8
141.0
-120.7
ASP-511
ARG-512
8.0
12.0
-140.8
-179.2
74.7
72.5
-8.0
ARG-512
VAL-513
10.7
10.5
160.7
59.0
42.0
96.3
-106.6
VAL-513
VAL-514
13.0
6.9
-165.7
-40.5
146.0
81.6
229.2
VAL-514
ALA-515
13.5
5.7
-1.8
-94.2
114.5
45.6
-107.0
ALA-515
ARG-516
10.9
5.0
127.8
-88.7
94.8
109.2
-40.9
ARG-516
ARG-517
11.2
7.4
50.6
-138.8
60.7
173.0
118.8
ARG-517
ARG-518
10.9
8.4
-143.0
-136.1
82.0
71.8
-180.5
ARG-518
GLY-519
9.1
11.0
-157.2
-106.6
28.8
142.1
-37.4
GLY-519
GLU-520
9.3
12.7
-12.2
-110.3
92.5
141.2
129.3
GLU-520
PRO-521
9.4
13.1
102.4
-20.8
144.2
60.9
-33.2
PRO-521
VAL-522
8.9
10.8
153.1
-166.0
74.0
103.2
-8.8
VAL-522
ILE-523
9.7
10.2
93.2
-15.2
135.7
64.6
110.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-529
GLU-530
2.3
5.1
-107.7
11.5
107.5
52.7
24.3
GLU-530
PHE-531
2.5
2.8
-63.5
-85.0
162.7
109.6
-191.9
PHE-531
MET-532
0.8
2.1
0.7
131.8
52.1
7.1
206.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees