3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-140   LEU-141  2.0 2.0 5.8 1.7 42.0 47.6 37.9
 LEU-141   LEU-142  2.4 2.5 3.7 0.9 44.9 45.7 27.5
 LEU-142   ALA-143  5.0 4.9 -12.4 9.1 129.6 134.3 -29.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-144   VAL-145  0.5 0.2 4.8 1.6 145.3 134.9 -39.6
 VAL-145   ASP-146  2.8 3.3 0.7 -14.3 118.8 125.1 57.5
 ASP-146   SER-147  5.1 5.1 5.0 -15.6 92.1 93.1 42.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-183   PRO-184  0.8 0.6 -6.7 -1.0 51.4 53.4 47.8
 PRO-184   VAL-185  2.5 2.8 6.4 -1.6 64.6 63.9 21.6
 VAL-185   ARG-186  6.0 6.3 1.6 -8.4 60.2 59.9 -32.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-246   ALA-247  7.0 6.9 4.5 -8.4 113.7 118.5 16.1
 ALA-247   ARG-248  3.3 3.3 0.1 -8.9 171.7 172.3 68.1
 ARG-248   HIS-249  4.6 4.7 9.3 -6.1 121.5 119.1 -44.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-253   VAL-254  6.3 7.2 3.6 -3.8 79.6 81.2 -2.8
 VAL-254   SER-255  5.7 6.5 -21.3 24.8 147.6 151.9 21.7
 SER-255   ALA-256  3.6 4.5 -28.6 10.9 146.8 138.5 -107.4
 GLY-261   GLY-262  12.8 16.4 43.6 -92.2 139.7 90.3 91.8
 GLY-262   LEU-263  15.0 16.0 -85.5 23.9 50.7 49.5 310.3
 LEU-263   ARG-264  12.2 13.5 -11.2 13.2 26.4 21.7 14.9
 ARG-264   ASN-265  11.9 12.4 5.4 15.6 124.8 128.8 -126.6
 ASN-265   LEU-266  15.5 15.8 0.4 0.6 126.4 124.1 59.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees