3-Phosphoglycerate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-201   LYS-202  6.0 6.8 40.5 -17.4 66.2 64.7 34.9
 LYS-202   VAL-203  8.7 9.3 -10.9 9.2 121.8 87.0 -24.0
 VAL-203   LEU-204  9.2 10.0 -2.2 -17.3 62.5 24.4 29.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-388   LYS-389  2.9 1.7 9.1 -20.0 81.0 87.3 4.3
 LYS-389   ARG-390  0.9 2.4 27.8 -22.1 88.2 103.6 11.6
 ARG-390   MET-391  3.6 3.4 -4.2 -38.3 145.4 137.7 -150.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-393   VAL-394  2.2 2.2 -3.2 0.4 100.3 98.3 -13.0
 VAL-394   SER-395  3.1 2.6 12.3 7.2 141.9 141.9 -57.3
 SER-395   THR-396  4.5 4.2 -6.0 -2.9 92.8 100.3 -21.2
 THR-396   GLY-397  7.5 7.0 -7.1 -23.4 51.7 55.3 41.9
 GLY-397   GLY-398  8.4 8.7 -21.7 44.6 114.4 85.2 6.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees