Dynamin-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-28   LEU-29  11.5 12.8 -85.0 -44.8 74.5 66.1 307.5
 LEU-29   ASP-30  8.6 10.4 -157.6 145.8 113.0 110.4 -104.5
 ASP-30   LEU-31  9.0 9.2 34.1 -27.2 131.3 140.7 -33.1
 LEU-31   PRO-32  8.6 8.9 11.3 -12.6 82.0 93.3 -20.1
 PRO-32   GLN-33  10.5 10.1 -5.2 -16.3 57.3 55.1 61.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-290   ASP-291  9.7 9.6 14.0 5.7 159.3 160.5 -135.7
 ASP-291   THR-292  9.7 9.7 -30.4 19.0 66.5 67.5 69.6
 THR-292   LEU-293  6.6 6.5 -4.1 3.4 120.3 118.0 19.9
 LEU-293   PRO-294  4.5 4.4 -3.8 -7.5 57.0 59.9 63.6
 PRO-294   GLY-295  4.1 4.3 9.3 -9.3 113.0 124.6 -9.5
 GLY-295   LEU-296  1.3 1.7 -0.2 6.4 130.3 123.6 10.5
 LEU-296   ARG-297  1.3 1.6 7.5 -0.9 76.1 74.4 -5.0
 ARG-297   ASN-298  2.6 2.3 -8.2 6.0 45.2 42.6 13.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees