Glutamate Receptor, Ionotropic Kainate 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  2.1 2.5 13.5 -14.1 38.1 40.5 -7.4
 LEU-108   GLY-109  1.2 1.1 7.9 -30.2 118.4 114.2 54.1
 GLY-109   VAL-110  4.8 4.7 8.3 5.0 39.0 40.8 26.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-211   SER-212  8.4 7.9 -4.1 18.0 84.1 87.8 -13.8
 SER-212   LYS-213  4.6 4.2 -1.5 23.9 110.4 92.3 38.4
 LYS-213   GLY-214  3.6 3.4 -27.1 -1.3 59.8 79.6 33.1
 GLY-214   TYR-215  4.2 3.7 -16.4 -2.2 63.7 68.0 5.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-248   TRP-249  13.3 13.5 -7.7 11.3 126.0 127.0 -5.6
 TRP-249   TRP-250  10.2 10.3 -3.0 -6.6 99.2 103.9 3.4
 TRP-250   ARG-251  7.8 8.1 -16.2 -30.9 125.7 118.5 -112.8
 ARG-251   GLY-252  10.5 11.2 148.8 65.6 9.4 52.9 405.3
 GLY-252   SER-253  11.5 14.0 -4.2 -127.3 130.4 150.4 -492.9
 SER-253   GLY-254  10.3 11.6 134.9 170.2 97.4 72.7 47.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees