Family B DNA Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-452
LEU-453
2.2
2.1
2.9
-5.1
50.8
48.1
-9.3
LEU-453
GLY-454
2.8
2.6
6.3
-7.5
81.4
79.2
10.5
GLY-454
ASP-455
3.2
3.2
5.2
-8.1
48.0
51.0
-6.0
ASP-455
LEU-456
2.9
3.0
11.2
-3.0
20.4
20.2
63.1
LEU-456
LEU-457
0.7
0.6
9.0
-16.3
65.8
61.3
-24.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-475
ARG-476
8.3
8.2
-34.8
36.7
122.2
116.4
-7.9
ARG-476
LYS-477
6.5
6.4
17.1
-8.8
82.8
85.6
-3.1
LYS-477
LEU-478
2.8
2.8
-21.1
5.0
129.5
138.0
-90.4
LEU-478
LEU-479
4.1
4.5
1.4
8.2
22.0
30.1
60.8
LEU-479
ASP-480
4.2
4.5
10.0
-20.6
84.0
84.5
3.8
ASP-480
TYR-481
2.7
1.9
-10.1
8.6
112.5
112.5
6.1
TYR-481
ARG-482
1.2
1.8
21.5
-19.2
11.6
16.1
17.0
ARG-482
GLN-483
1.5
2.2
-5.2
14.0
127.3
127.1
34.7
GLN-483
ARG-484
2.1
1.4
-18.4
21.4
86.3
91.7
-7.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees