Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  1.1 1.5 -13.2 -13.0 64.5 62.4 45.1
 GLY-110   ILE-111  2.7 2.7 12.2 10.8 40.6 43.2 50.7
 ILE-111   SER-112  5.8 5.9 -8.7 9.6 113.6 115.1 33.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-192   THR-193  1.7 2.2 3.8 -3.4 118.1 122.9 -7.8
 THR-193   THR-194  2.1 1.9 1.4 -0.4 157.6 156.9 -2.6
 THR-194   ILE-195  2.5 1.8 -4.3 3.3 53.4 56.7 11.7
 ILE-195   GLU-196  1.6 2.3 -13.3 -8.6 112.9 114.0 -48.1
 ILE-195   GLU-196  1.6 2.3 -13.3 -8.6 112.9 114.0 -48.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-195   GLU-196  1.6 2.3 -13.3 -8.6 112.9 114.0 -48.1
 ILE-195   GLU-196  1.6 2.3 -13.3 -8.6 112.9 114.0 -48.1
 GLU-196   PHE-197  3.0 3.8 18.2 -4.8 36.0 48.3 37.5
 PHE-197   VAL-198  3.2 3.2 -1.6 -1.4 144.8 153.1 -3.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-212   ASP-213  8.8 8.7 1.5 0.0 29.9 33.6 9.1
 ASP-213   SER-214  6.1 5.8 -9.9 16.0 86.2 84.4 -3.7
 SER-214   LYS-215  2.4 2.3 -5.4 23.4 108.4 99.8 23.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees