Glutamate Receptor 3

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  13.0 12.8 3.9 -0.7 145.4 143.8 -60.4
 SER-108   LEU-109  10.9 10.7 2.1 -7.6 73.9 74.5 -84.1
 LEU-109   GLY-110  12.2 12.0 -6.7 1.8 37.1 37.5 100.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  13.6 13.5 2.6 5.4 123.6 122.8 -173.0
 SER-217   LYS-218  11.2 11.3 17.2 -14.1 81.2 85.2 255.4
 LYS-218   GLY-219  13.2 13.2 -8.2 8.5 33.2 34.2 -124.9
 GLY-219   TYR-220  14.5 14.4 -3.0 -1.6 75.7 72.4 201.2
 TYR-220   GLY-221  17.5 17.4 -0.9 4.2 96.9 99.4 -27.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees