Dna-Directed RNA Polymerase II Largest Subunit
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-344
VAL-345
20.0
19.9
45.2
-25.0
46.5
38.0
42.3
VAL-345
ASP-346
19.4
18.0
78.7
0.3
18.4
32.7
229.8
ASP-346
PHE-347
19.0
19.0
22.9
-11.1
48.3
51.4
28.7
PHE-347
SER-348
18.5
18.8
5.1
23.5
100.6
111.0
-17.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-1381
THR-1382
20.9
20.6
0.4
-2.1
94.5
96.8
-10.1
THR-1382
SER-1383
17.8
17.6
2.7
-1.2
124.4
122.5
-14.6
SER-1383
VAL-1384
19.0
18.6
-6.1
23.7
38.6
32.9
-35.8
VAL-1384
THR-1385
18.1
18.2
36.6
-18.8
89.2
73.5
1.0
THR-1385
ARG-1386
19.4
17.5
116.8
-121.7
61.2
87.1
8.2
ARG-1386
HIS-1387
16.1
14.2
-130.4
33.5
165.7
137.3
-293.8
HIS-1387
GLY-1388
14.3
13.8
52.5
-37.0
79.4
104.8
-3.0
GLY-1388
PHE-1389
10.9
13.9
140.9
3.6
108.2
133.3
591.2
PHE-1389
ASN-1390
11.2
12.3
6.8
55.9
131.4
99.3
-28.4
ASN-1390
ARG-1391
8.0
9.6
-122.9
174.7
70.9
128.0
-42.3
ARG-1391
SER-1392
7.2
8.0
128.9
-153.5
99.0
116.0
-79.9
SER-1392
ASN-1393
9.5
8.9
5.8
-47.8
124.0
94.9
-17.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-1432
MET-1433
3.9
3.8
-7.6
33.7
94.5
100.8
6.1
MET-1433
ALA-1434
0.5
1.2
22.7
-69.0
134.8
148.9
116.4
ALA-1434
PRO-1435
2.3
2.9
31.8
-5.2
73.6
76.4
29.7
PRO-1435
ILE-1436
5.4
6.2
15.8
14.7
88.1
76.7
26.3
ILE-1436
GLY-1437
7.6
8.0
30.2
-82.1
20.9
36.6
-170.6
GLY-1437
THR-1438
10.0
10.1
49.7
-3.5
41.6
56.6
96.0
THR-1438
GLY-1439
7.9
7.0
-8.2
-5.4
75.2
62.0
7.1
GLY-1439
ALA-1440
5.8
5.6
33.6
-29.5
132.2
131.6
-22.5
ALA-1440
PHE-1441
8.8
8.9
-73.8
73.9
110.6
113.5
15.0
PHE-1441
ASP-1442
10.1
10.3
-16.4
9.6
123.6
112.4
-6.9
ASP-1442
VAL-1443
9.6
9.2
-10.0
7.6
157.4
162.8
-1.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees