Glycogen [Starch] Synthase Isoform 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-195   LEU-196  5.0 5.3 -1.5 2.3 138.4 134.5 -22.9
 LEU-196   LEU-197  7.2 7.6 7.5 0.5 48.2 48.9 105.8
 LEU-197   GLY-198  4.4 4.7 -17.2 8.9 66.8 69.6 95.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-200   LEU-201  8.0 8.4 5.1 -2.0 116.1 117.2 15.5
 LEU-201   CYS-202  6.1 6.5 -1.5 3.4 109.4 107.3 -41.4
 CYS-202   ALA-203  8.8 9.1 -5.8 10.7 73.4 72.7 -52.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-206   PHE-207  10.8 10.8 -1.4 5.0 84.9 84.2 24.0
 PHE-207   ASP-208  10.7 10.5 -5.4 -1.8 16.1 15.6 127.2
 ASP-208   PHE-209  11.5 11.4 -3.0 12.5 68.5 66.1 -67.8
 PHE-209   TYR-210  8.1 8.1 -9.7 7.4 42.4 49.3 -67.8
 TYR-210   ASN-211  9.2 9.2 -10.8 9.8 100.4 101.8 -40.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-216   ASP-217  4.4 3.9 -5.5 16.8 97.5 98.8 -92.3
 ASP-217   VAL-218  4.5 4.3 2.5 -0.9 106.3 112.7 87.3
 VAL-218   ASP-219  4.4 4.4 0.3 -6.1 52.6 53.2 15.8
 ASP-219   HIS-220  6.8 7.0 7.2 -42.1 52.0 49.4 -304.1
 HIS-220   GLU-221  4.0 4.8 56.8 -13.8 117.2 109.1 126.2
 GLU-221   ALA-222  3.0 3.3 -14.5 8.5 68.4 67.4 187.0
 ALA-222   GLY-223  6.4 6.6 4.9 2.4 47.1 44.9 27.5
 GLY-223   ARG-224  8.1 8.3 -3.9 16.9 109.1 108.7 4.9
 ARG-224   PHE-225  7.0 7.1 -36.4 24.7 51.6 57.3 -5.8
 PHE-225   GLY-226  9.0 9.3 3.1 -7.4 93.9 90.6 12.0
 GLY-226   ILE-227  11.8 12.0 17.4 -17.2 153.0 155.3 -15.9
 ILE-227   TYR-228  11.2 11.5 11.9 -15.1 94.7 98.7 -23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-244   THR-245  10.6 10.6 -4.1 3.8 66.5 68.6 40.3
 THR-245   THR-246  7.0 7.1 7.5 -4.6 64.0 62.6 34.4
 THR-246   VAL-247  3.6 3.7 -4.9 13.0 36.6 34.1 -131.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-251   ALA-252  1.7 1.3 -10.9 5.3 84.8 82.5 87.2
 ALA-252   PHE-253  3.9 3.6 3.1 -2.9 147.6 142.1 23.5
 PHE-253   GLU-254  5.8 5.6 0.1 2.7 145.8 145.3 -33.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-271   ASN-272  9.7 9.7 9.7 2.0 157.4 157.6 -177.7
 ASN-272   VAL-273  11.6 11.4 6.9 3.3 117.5 122.5 16.1
 VAL-273   ILE-274  12.2 11.5 -2.0 -16.4 29.4 30.1 277.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-500   LEU-501  26.9 26.9 -2.5 -1.1 61.1 61.2 32.6
 LEU-501   GLY-502  24.6 24.5 -2.7 -0.7 47.5 45.7 28.1
 GLY-502   VAL-503  21.8 21.9 2.7 -7.2 139.8 135.9 -65.7
 VAL-503   PHE-504  21.5 21.4 0.0 -2.2 50.6 48.6 -65.4
 VAL-503   PHE-504  21.5 21.4 0.0 -2.2 50.6 48.6 -65.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-503   PHE-504  21.5 21.4 0.0 -2.2 50.6 48.6 -65.4
 VAL-503   PHE-504  21.5 21.4 0.0 -2.2 50.6 48.6 -65.4
 PHE-504   PRO-505  18.3 18.3 2.1 -9.3 51.9 53.9 -72.8
 PRO-505   SER-506  18.0 17.8 5.7 6.6 53.5 48.2 280.0
 SER-506   TYR-507  14.6 14.5 0.8 -4.5 52.5 55.3 -165.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-508   GLU-509  9.7 9.7 4.1 -5.3 28.9 29.6 3.9
 GLU-509   PRO-510  9.0 9.1 -2.0 2.4 118.0 118.8 -20.0
 PRO-510   TRP-511  5.4 5.6 13.0 4.0 11.1 12.3 319.6
 TRP-511   GLY-512  6.9 7.0 159.3 -176.6 79.3 83.5 -308.0
 GLY-512   TYR-513  10.4 10.7 6.1 -2.2 31.2 18.4 89.6
 TYR-513   THR-514  11.3 11.9 -1.7 16.1 100.9 95.9 -55.2
 THR-514   PRO-515  14.8 15.3 -1.4 -2.1 122.2 119.2 -38.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-517   CYS-518  14.7 15.0 -14.1 7.6 75.9 69.5 111.0
 CYS-518   THR-519  17.3 17.6 1.3 5.3 139.6 140.0 -68.0
 THR-519   VAL-520  15.6 15.7 -18.2 16.6 25.7 24.6 38.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-523   PRO-524  20.9 21.1 -0.8 -3.1 48.0 52.9 133.1
 PRO-524   SER-525  20.9 21.0 -1.7 2.4 23.9 21.9 -42.8
 SER-525   ILE-526  19.7 19.6 -2.8 -2.4 49.3 48.7 -3.1
 ILE-526   THR-527  19.6 19.6 -2.2 -2.4 58.5 57.0 179.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-597   ASP-598  7.2 7.1 14.1 -3.8 67.2 63.6 124.4
 ASP-598   TRP-599  6.5 6.1 -11.6 3.6 77.0 74.3 40.1
 TRP-599   LYS-600  5.6 5.4 6.5 -8.4 47.0 47.2 -120.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees