Glutamate Receptor Ionotropic, Nmda 2A
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-134
GLY-135
6.2
6.8
3.3
6.8
30.8
32.4
54.7
GLY-135
ILE-136
3.5
4.1
10.4
-12.2
107.7
110.0
-10.3
ILE-136
SER-137
1.0
1.3
8.5
-7.3
113.7
112.1
72.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
MET-139
VAL-140
6.5
6.2
-3.1
-4.4
98.4
96.7
3.3
VAL-140
SER-141
10.2
9.8
-3.3
4.8
159.9
154.7
7.3
SER-141
ARG-142
12.1
11.8
-7.1
12.0
80.6
75.7
17.5
ARG-142
GLY-143
13.3
12.7
1.2
-17.0
77.7
67.9
-77.8
ARG-142
GLY-143
13.3
12.7
1.2
-17.0
77.7
67.9
-77.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-142
GLY-143
13.3
12.7
1.2
-17.0
77.7
67.9
-77.8
ARG-142
GLY-143
13.3
12.7
1.2
-17.0
77.7
67.9
-77.8
GLY-143
THR-144
16.7
15.7
17.8
12.7
25.3
38.7
170.9
THR-144
GLN-145
15.7
15.1
-6.1
26.9
133.4
152.5
85.5
GLN-145
VAL-146
15.8
16.1
-11.8
0.0
146.6
134.2
-31.2
VAL-146
THR-147
13.2
13.2
-27.1
16.1
105.7
112.2
-48.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-221
LYS-222
3.3
3.6
-2.2
0.5
127.1
125.9
-6.8
LYS-222
ALA-223
0.7
1.0
1.4
6.5
75.2
78.3
22.7
ALA-223
GLY-224
3.3
2.9
2.2
-10.7
47.6
42.2
-43.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-230
LEU-231
10.2
9.9
-11.3
5.8
161.6
155.0
-29.7
LEU-231
VAL-232
8.0
7.8
-11.2
1.1
118.8
114.7
-74.6
VAL-232
THR-233
8.2
7.2
19.0
13.7
27.9
22.4
200.8
THR-233
ILE-234
6.4
5.8
-14.1
-13.1
128.0
120.4
-12.2
ILE-234
GLY-235
8.2
8.5
-4.8
138.0
89.7
120.4
306.3
GLY-235
SER-236
9.8
10.5
-126.9
114.1
128.5
64.3
-93.9
SER-236
GLY-237
8.6
10.8
80.5
138.0
12.1
77.3
-910.9
GLY-237
TYR-238
10.3
7.4
58.9
37.0
60.7
14.6
614.2
TYR-238
ILE-239
8.0
7.0
151.1
-77.4
92.7
80.1
73.2
ILE-239
PHE-240
4.6
4.2
-9.1
1.6
161.5
169.8
-75.8
PHE-240
ALA-241
2.4
2.4
5.4
-3.0
85.0
79.6
7.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees