DNA Polymerase IV (Family Y)
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-109
ASP-110
9.3
9.3
-4.3
8.3
140.1
142.5
57.5
ASP-110
ILE-111
8.5
8.6
-0.1
-2.3
129.1
127.3
-192.2
ILE-111
SER-112
7.9
8.0
8.8
-4.2
26.7
27.3
148.6
SER-112
ASP-113
6.2
6.3
4.8
-5.3
40.1
39.7
-76.8
ASP-113
LYS-114
9.2
9.2
6.6
-10.2
96.2
97.5
83.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-120
ALA-121
9.5
9.5
12.2
-17.1
32.8
36.3
-132.6
ALA-121
TYR-122
7.2
7.3
4.5
0.2
37.3
34.6
179.3
TYR-122
ASN-123
9.1
9.1
7.5
-10.1
85.3
86.1
-36.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-144
SER-145
2.3
2.2
8.9
-8.3
68.6
69.2
188.4
SER-145
LYS-146
1.7
1.8
0.0
-1.6
130.4
129.3
-60.8
LYS-146
ASN-147
3.8
3.8
-6.5
8.5
67.6
69.7
-26.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-158
LYS-159
7.5
7.4
4.0
-1.5
44.6
42.8
-51.2
LYS-159
PRO-160
6.7
6.5
-0.6
3.4
137.1
133.3
-88.0
PRO-160
ASN-161
8.7
8.7
-2.1
1.1
49.1
46.7
94.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-164
VAL-165
7.2
7.1
6.4
-6.9
45.6
41.7
16.9
VAL-165
ILE-166
6.0
6.0
3.1
-3.1
91.9
93.2
10.1
ILE-166
ASP-167
6.3
6.3
5.9
-3.7
21.3
19.7
37.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-238
THR-239
13.6
13.8
-2.4
-2.7
24.9
29.3
103.8
ARG-238
THR-239
13.6
13.8
-2.4
-2.7
24.9
29.3
103.8
ARG-230
ASP-231
17.0
17.1
0.2
-1.4
117.9
118.5
63.5
ASP-231
GLU-232
13.2
13.3
-7.2
4.7
55.2
56.3
51.9
GLU-232
TYR-233
14.1
14.1
6.2
0.4
56.5
55.2
126.7
TYR-233
ASN-234
12.8
12.8
-8.4
10.0
60.9
60.1
1.2
ASN-234
GLU-235
12.4
12.8
-17.1
5.3
124.3
123.3
-231.0
GLU-235
PRO-236
12.8
13.0
-4.9
2.1
74.4
75.3
214.2
PRO-236
ILE-237
12.7
12.7
-5.8
6.7
138.7
138.4
-7.5
ILE-237
ARG-238
12.0
12.1
-3.4
11.0
86.7
88.1
24.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees