Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-67   PHE-68  16.9 16.9 8.0 -12.1 146.9 151.6 1.0
 PHE-68   LEU-69  16.4 16.7 5.5 3.4 80.7 89.2 -2.9
 LEU-69   THR-70  14.4 13.6 -2.5 3.9 102.8 77.3 -2.3
 ARG-74   CYS-75  6.7 10.2 -3.4 -15.7 19.2 68.0 12.5
 LYS-77   ASP-78  2.5 5.6 152.8 -111.2 128.7 85.4 3.9
 ASP-78   THR-79  2.4 4.8 -21.3 -21.9 30.1 19.2 34.2
 THR-79   ASP-80  1.5 5.0 -139.9 170.0 98.0 79.5 -1.7
 ASP-80   SER-81  2.9 4.3 140.7 -93.3 81.6 97.7 3.8
 SER-81   GLU-82  3.3 2.1 1.1 -104.1 152.8 157.8 66.7
 GLU-82   GLU-83  3.8 2.5 -156.6 136.3 58.8 61.1 0.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees