3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-139   THR-140  3.2 3.4 0.2 -3.9 104.5 109.0 -37.5
 THR-140   LEU-141  1.3 1.2 19.4 -11.0 47.4 48.8 43.7
 LEU-141   LEU-142  3.3 3.4 13.0 -3.9 35.5 40.5 59.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-143   MET-144  3.0 2.8 -6.2 5.2 58.0 57.6 3.3
 MET-144   VAL-145  0.8 1.2 6.2 4.2 146.0 136.9 -61.5
 VAL-145   ASP-146  3.4 4.0 -18.9 9.9 58.7 49.8 72.0
 ASP-146   SER-147  4.3 4.4 15.4 -34.4 87.2 94.1 45.7
 SER-147   SER-148  5.7 5.4 1.8 28.5 110.3 105.7 -54.2
 SER-148   ILE-149  4.3 4.2 -9.4 4.9 19.1 11.5 5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-182   LEU-183  3.6 3.3 23.1 -22.7 75.8 76.5 0.6
 LEU-183   PRO-184  1.5 1.6 -10.5 4.3 54.6 56.4 33.1
 PRO-184   VAL-185  3.7 4.0 11.1 0.3 63.6 62.5 48.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-247   ARG-248  4.8 4.6 7.2 -19.9 164.2 167.8 105.4
 ARG-248   HIS-249  6.7 6.3 17.4 -8.0 127.4 124.1 -93.8
 HIS-249   LYS-250  7.3 7.5 7.9 -4.4 98.7 96.7 4.4
 LYS-250   ALA-251  4.8 5.1 -3.9 -0.4 51.8 47.1 40.1
 ALA-251   TYR-252  2.3 2.2 3.9 7.5 162.7 161.2 -90.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-253   VAL-254  5.7 6.1 -15.9 13.9 81.6 80.1 22.9
 VAL-254   SER-255  3.5 4.4 -7.5 19.4 36.1 31.9 -64.8
 SER-255   ALA-256  0.8 1.9 -19.2 14.5 31.5 36.7 55.1
 ALA-256   ASP-257  3.7 4.5 -48.4 144.9 82.8 86.1 99.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees