Glutamate Receptor, Ionotropic Kainate 1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-104
PHE-105
8.9
8.7
-13.7
13.2
141.1
140.3
5.2
PHE-105
MET-106
9.2
9.3
2.4
-0.5
72.4
72.8
-1.1
MET-106
THR-107
5.5
5.6
-20.3
1.0
41.9
38.7
57.1
THR-107
LEU-108
2.8
3.5
-23.0
25.5
113.3
112.2
-5.1
LEU-108
GLY-109
1.1
1.5
5.8
-23.8
139.1
134.7
40.2
GLY-109
ILE-110
4.3
4.2
10.9
-2.0
61.7
62.7
-3.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-211
ASP-212
9.4
9.3
1.4
9.1
53.8
51.4
51.7
ASP-212
SER-213
5.8
5.9
4.0
-2.6
118.8
113.6
-0.2
SER-213
LYS-214
2.2
2.2
14.8
-1.7
85.0
89.3
25.3
LYS-214
GLY-215
2.0
1.9
-21.6
7.0
38.5
47.5
32.5
GLY-215
TYR-216
4.4
4.2
-13.8
0.5
63.4
59.6
13.9
TYR-216
GLY-217
7.0
6.6
-15.8
14.2
100.6
96.9
2.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees