Mhc Class II Nod
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-84
GLU-84A
2.5
2.7
0.4
-9.9
102.5
105.4
41.7
GLU-84A
THR-85
6.0
6.3
14.9
-7.9
158.7
165.3
-67.0
THR-85
GLU-86
5.9
5.9
-4.0
-6.7
60.2
58.8
-0.7
GLU-86
VAL-87
3.0
2.9
4.0
-0.1
76.6
69.4
-11.2
VAL-87
PRO-88
5.3
4.9
-5.0
0.7
63.2
65.8
40.3
PRO-88
THR-89
8.3
8.1
1.8
3.1
178.3
174.9
-65.9
THR-89
SER-90
7.1
7.0
1.0
-6.8
110.5
109.1
47.3
SER-90
LEU-91
4.5
4.7
20.3
-10.5
65.2
60.8
48.3
LEU-91
ARG-92
6.1
6.2
4.4
-14.7
88.7
87.8
61.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees