Cytidylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-36   GLY-37  1.9 2.3 -61.2 58.9 123.8 134.1 9.4
 GLY-37   ALA-38  3.7 4.1 -14.3 30.5 124.8 123.7 30.8
 ALA-38   ILE-39  1.2 1.7 -43.4 19.6 57.7 56.1 46.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-113   LEU-114  5.6 5.3 -2.9 19.5 117.0 121.2 54.9
 LEU-114   ARG-115  2.9 2.9 -34.3 18.8 105.9 94.2 16.0
 ARG-115   ARG-116  5.5 5.0 0.5 8.7 140.2 153.4 -28.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees