Seventeen Kilodalton Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-39   THR-40  2.7 2.6 10.9 -8.7 118.8 126.1 -65.5
 THR-40   GLY-41  3.3 3.3 11.8 -14.2 96.5 96.3 54.0
 GLY-41   VAL-42  6.7 6.9 11.1 -20.2 161.2 166.8 99.9
 VAL-42   SER-43  6.5 6.8 5.1 -7.7 108.4 100.4 35.4
 SER-43   ASN-44  9.7 9.8 3.4 3.0 72.8 72.8 -42.6
 ASN-44   THR-45  11.8 12.0 -5.2 5.0 61.1 50.6 -23.4
 THR-45   LEU-46  11.1 11.3 6.0 -13.5 156.2 153.7 70.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-114   LYS-115  2.0 2.1 -9.3 7.7 59.0 47.9 -12.5
 LYS-115   LEU-116  1.7 1.6 -2.2 -9.1 34.9 38.9 58.8
 LEU-116   VAL-117  2.0 2.4 7.1 4.2 79.2 76.8 -24.1
 VAL-117   THR-118  5.3 5.5 -10.1 1.0 95.0 91.0 38.7
 THR-118   ARG-119  6.2 6.3 3.3 -4.1 148.6 152.6 -21.0
 ARG-119   ILE-120  6.4 6.4 1.1 -5.6 119.2 119.3 52.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees