Nitrate/nitrite Response Regulator Protein Narl

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-45   GLU-46  3.8 8.0 -162.6 15.8 35.8 84.3 -188.8
 GLU-46   LEU-47  3.9 6.6 -5.3 7.1 92.5 134.2 -1.6
 LEU-47   ALA-48  7.4 3.6 0.1 -2.8 45.5 23.1 -4.5
 ALA-48   GLU-49  6.7 5.6 13.6 -11.4 109.7 83.8 9.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-64   MET-65  16.8 8.4 -36.4 -112.8 41.0 126.4 28.5
 MET-65   ASN-66  15.1 8.2 -79.6 44.6 102.0 125.6 -26.5
 ASN-66   GLY-67  11.8 11.8 -63.9 -2.7 83.1 134.8 -58.7
 GLY-67   LEU-68  9.8 11.5 2.5 -18.1 110.1 39.2 -1.9
 LEU-68   GLU-69  7.5 8.4 13.6 137.8 48.4 67.7 78.6
 GLU-69   THR-70  7.8 10.1 80.6 -67.0 51.9 94.6 14.4
 THR-70   LEU-71  5.9 8.0 -159.8 -8.2 65.0 19.5 126.2
 LEU-71   ASP-72  3.3 8.9 -156.0 -4.1 83.2 131.9 231.6
 LEU-71   ASP-72  3.3 8.9 -156.0 -4.1 83.2 131.9 231.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-71   ASP-72  3.3 8.9 -156.0 -4.1 83.2 131.9 231.6
 LEU-71   ASP-72  3.3 8.9 -156.0 -4.1 83.2 131.9 231.6
 ASP-72   LYS-73  3.7 7.2 15.4 12.5 155.4 84.0 -4.5
 LYS-73   LEU-74  3.3 7.0 -26.3 12.8 78.5 55.8 4.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-75   GLU-76  2.7 2.6 -36.3 24.5 119.2 45.0 14.0
 GLU-76   LYS-77  4.8 2.0 -3.2 9.4 133.9 108.8 5.2
 LYS-77   SER-78  4.5 4.1 149.8 29.1 115.7 67.7 0.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees