Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-138   ARG-139  1.2 2.5 0.1 -6.7 120.4 119.7 15.4
 ARG-139   ILE-140  2.4 0.9 13.1 -24.1 156.7 146.6 18.3
 ILE-140   THR-141  0.7 1.5 2.3 0.9 93.0 85.7 -14.1
 THR-141   GLY-142  3.3 5.1 19.4 -8.6 73.3 65.7 -3.4
 GLY-142   ARG-143  5.1 5.6 10.4 -45.0 114.2 123.7 39.7
 ARG-143   LEU-144  6.1 6.3 -22.3 8.5 75.0 58.8 23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-172   LEU-173  19.4 19.2 -17.5 33.5 108.8 114.8 -2.9
 LEU-173   ILE-174  15.6 15.4 -15.1 2.1 97.8 100.9 -19.8
 ILE-174   ARG-175  13.6 13.7 24.1 -37.8 112.3 99.1 5.8
 ARG-175   ARG-176  11.0 10.4 4.9 32.9 41.1 26.6 63.7
 ARG-176   SER-177  7.9 8.1 101.5 19.9 114.9 89.5 -52.5
 SER-177   ASP-178  8.4 9.1 -70.8 19.3 121.4 74.7 -68.2
 ASP-178   ASP-179  8.5 5.9 -119.8 -19.6 73.7 18.1 230.0
 ASP-179   ASN-180  8.2 5.2 -114.9 79.1 134.2 55.2 15.0
 ASN-180   LYS-181  8.2 8.6 77.1 25.5 116.2 117.8 -92.0
 LYS-181   LYS-182  8.4 9.0 -16.3 3.5 106.1 115.7 -13.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees