Uridylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-137   ALA-138  7.8 7.7 6.7 0.6 25.5 24.1 40.4
 ALA-138   THR-139  7.6 7.7 -0.2 7.3 106.7 103.1 21.7
 THR-139   ASN-140  8.3 8.2 -7.7 2.4 139.7 144.9 -37.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-163   GLN-164  3.4 2.9 -21.1 3.1 118.5 120.2 -33.5
 GLN-164   ASP-165  5.6 4.8 8.8 -10.3 127.3 122.9 -35.1
 ASP-165   LEU-166  7.1 6.3 31.3 -29.0 126.9 132.5 13.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees