Saccharopine Dehydrogenase [Nad+, L-Lysine- Forming
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-132
ALA-133
5.1
5.2
-3.6
-3.4
16.6
11.5
21.2
ALA-133
ALA-134
3.0
3.4
5.5
-4.5
108.3
103.4
17.1
ALA-134
PHE-135
3.0
3.4
-30.7
25.1
8.8
4.3
17.9
PHE-135
GLY-136
3.7
3.7
-26.6
1.7
67.9
64.5
95.1
GLY-136
PHE-137
7.4
7.5
7.5
-1.7
152.3
150.9
-43.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-167
PRO-168
9.1
9.1
-13.0
9.3
71.9
59.2
87.2
PRO-168
TYR-169
6.2
6.4
-6.1
23.0
135.5
131.2
57.2
TYR-169
PRO-170
3.2
3.1
-16.8
-0.9
67.3
68.5
60.5
PRO-170
ASN-171
4.6
4.6
10.9
-0.2
112.7
108.6
-36.8
ASN-171
GLU-172
3.7
3.6
1.4
-1.0
77.8
78.7
-37.4
GLU-172
LYS-173
4.1
3.9
3.9
-1.0
19.1
15.1
38.9
LYS-173
ALA-174
5.6
5.0
-2.7
5.2
125.2
120.4
-6.5
ALA-174
LEU-175
2.1
1.3
-6.5
10.9
80.6
76.0
8.1
LEU-175
VAL-176
3.1
3.0
-11.1
5.5
113.0
119.4
-16.8
VAL-176
LYS-177
6.4
6.0
-2.4
4.6
174.9
170.3
20.1
LYS-177
ASP-178
5.3
4.7
-7.9
7.3
107.5
100.6
-15.0
ASP-178
VAL-179
5.0
5.1
-5.3
0.3
81.5
82.1
-21.8
VAL-179
THR-180
8.4
8.4
-3.7
5.1
130.5
132.4
-1.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-322
SER-323
4.6
4.6
-1.1
-3.8
120.8
118.8
-31.0
SER-323
LEU-324
5.9
5.7
5.9
-0.4
9.6
8.0
41.3
LEU-324
LEU-325
5.2
5.5
2.9
5.8
76.1
73.1
42.5
LEU-325
PRO-326
1.4
1.7
-0.1
-14.2
39.8
45.3
50.8
PRO-326
ARG-327
3.5
3.6
4.8
2.3
100.7
100.2
-3.3
ARG-327
GLU-328
4.7
4.8
-7.4
9.7
61.6
59.5
-19.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees