2-Methylcitrate Synthase, Mitochondrial

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-82   GLY-83  5.9 6.1 0.2 -4.8 156.1 158.7 -30.8
 GLY-83   SER-84  5.7 5.8 -3.2 1.6 47.8 46.2 38.5
 SER-84   VAL-85  7.4 7.4 8.5 0.8 65.7 66.0 142.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-92   ARG-93  11.0 10.8 2.1 1.3 91.5 89.9 47.5
 ARG-93   PHE-94  11.1 11.1 1.8 -4.3 127.5 127.3 17.5
 PHE-94   HIS-95  9.2 9.2 -1.5 4.5 61.8 61.6 -1.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-303   LEU-304  19.5 19.1 -1.9 -11.8 100.2 99.9 -17.8
 LEU-304   HIS-305  18.8 18.3 2.7 -1.6 82.6 77.1 -43.2
 HIS-305   GLY-306  15.1 14.6 -55.1 41.4 41.8 40.6 191.4
 GLY-306   LEU-307  13.7 12.6 -40.5 25.4 19.9 28.2 208.3
 LEU-307   ALA-308  15.7 15.3 -5.5 12.4 56.2 56.0 -139.4
 ALA-308   ALA-309  14.7 15.2 -1.8 -3.2 27.3 24.6 23.6
 ALA-309   GLN-310  12.2 12.6 -1.4 4.6 46.9 46.7 29.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-347   GLY-348  19.0 19.3 9.1 -10.5 78.2 78.8 -8.7
 GLY-348   TYR-349  16.0 16.2 6.6 1.0 96.8 95.2 -0.4
 TYR-349   GLY-350  18.6 18.7 0.9 -3.9 152.5 154.3 -31.7
 GLY-350   HIS-351  20.1 19.8 66.5 -63.5 144.1 133.5 88.6
 HIS-351   GLY-352  18.1 18.0 -2.7 0.5 41.7 24.9 83.6
 GLY-352   VAL-353  19.5 18.5 -11.1 16.4 71.0 58.4 23.2
 VAL-353   LEU-354  19.9 17.3 -2.5 7.9 137.2 132.3 -176.3
 LEU-354   ARG-355  18.9 17.1 4.9 -12.1 42.4 70.6 -111.3
 ARG-355   LYS-356  21.9 20.5 -33.4 20.2 152.2 153.7 -140.7
 LYS-356   PRO-357  19.8 19.7 -9.8 8.1 104.1 121.8 185.0
 PRO-357   ASP-358  16.7 17.2 1.0 -24.4 129.7 113.8 143.4
 ASP-358   PRO-359  13.6 13.6 -4.4 1.2 114.3 115.2 -6.7
 PRO-359   ARG-360  12.4 12.2 0.0 0.5 72.9 72.6 -34.7
 ARG-360   PHE-361  8.7 8.6 -8.9 5.3 156.2 158.0 -3.4
 PHE-361   GLN-362  10.2 10.2 2.7 -9.0 52.6 50.4 -90.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-367   ALA-368  6.8 6.6 -0.9 -2.2 156.6 157.1 -37.5
 ALA-368   ALA-369  6.2 6.2 10.5 -1.0 46.4 47.2 120.5
 ALA-369   THR-370  9.5 9.5 6.7 -34.1 63.3 54.2 -239.3
 THR-370   ARG-371  9.1 8.8 25.7 1.0 51.2 62.5 348.1
 ARG-371   PRO-372  5.7 5.3 -11.8 7.0 140.6 138.0 -130.9
 PRO-372   ASP-373  5.4 5.6 -2.5 -7.7 99.1 99.3 50.4
 ASP-373   VAL-374  1.6 2.2 6.9 8.9 122.2 131.4 -91.5
 VAL-374   LEU-375  3.1 3.8 -5.3 -0.7 110.8 107.5 20.2
 LEU-375   ALA-376  6.4 7.2 -11.7 10.3 146.2 142.9 -39.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-417   TYR-418  6.0 6.3 -0.3 1.3 92.5 95.5 -27.3
 TYR-418   GLY-419  6.1 6.0 5.6 -16.2 92.0 88.3 59.5
 GLY-419   PHE-420  9.8 9.7 16.4 -18.0 142.8 143.8 -103.2
 PHE-420   GLN-421  10.9 10.7 -20.0 13.1 101.4 90.6 109.6
 GLN-421   GLN-422  13.4 13.1 18.3 -8.2 117.6 120.4 -314.2
 GLN-422   PRO-423  16.0 15.5 -20.2 4.2 31.8 34.6 270.5
 PRO-423   LEU-424  15.0 14.7 -7.2 2.3 25.9 23.4 81.6
 LEU-424   TYR-425  17.3 16.9 6.8 -6.5 122.7 121.7 -15.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees