Dna-Directed RNA Polymerase Alpha Chain
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-46
SER-47
5.8
5.5
-2.5
0.9
112.3
116.7
13.2
SER-47
ILE-48
3.1
3.1
9.7
3.3
113.9
111.8
0.2
ILE-48
PRO-49
0.7
0.7
-38.6
41.2
46.8
52.9
45.6
PRO-49
GLY-50
4.3
4.4
12.9
-9.3
143.5
159.1
-11.8
GLY-50
THR-51
5.4
5.2
-23.1
-4.8
53.6
57.1
84.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-168
ALA-169
11.1
11.1
-9.3
0.6
60.8
61.3
17.6
ALA-169
VAL-170
9.1
9.3
-4.5
-2.2
76.9
68.4
5.2
VAL-170
PHE-171
5.4
5.6
7.8
-5.1
128.1
119.2
16.1
PHE-171
SER-172
4.5
4.4
6.9
-3.6
117.9
112.4
57.0
SER-172
PRO-173
1.4
1.4
-3.5
9.9
120.0
120.9
9.2
PRO-173
VAL-174
2.3
2.3
-1.5
2.9
95.9
97.5
8.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees