Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-190   LEU-191  6.2 6.0 6.0 6.8 102.3 109.8 -3.0
 LEU-191   ILE-192  3.0 3.4 6.0 -5.4 26.5 29.2 8.8
 ILE-192   ARG-193  0.5 1.6 17.4 -1.9 58.3 63.2 18.3
 ARG-193   PRO-194  3.3 2.3 -4.1 -4.4 90.5 100.3 -11.4
 PRO-194   GLU-195  5.1 4.3 -7.7 1.4 120.6 126.9 -15.9
 GLU-195   ALA-196  4.4 4.4 26.0 -12.5 9.2 20.7 63.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-376   ALA-377  6.1 5.9 10.6 -15.1 79.0 84.3 -16.2
 ALA-377   ALA-378  2.9 3.1 6.7 7.6 31.4 35.6 53.3
 ALA-378   ASN-379  4.9 5.4 15.6 -25.0 24.4 24.0 -10.9
 ASN-379   ALA-380  5.8 5.2 3.2 -4.1 75.1 80.0 -45.1
 ALA-380   GLY-381  3.6 2.8 12.0 -5.5 35.6 39.1 26.1
 GLY-381   GLY-382  1.6 0.9 16.8 -3.4 41.4 43.3 49.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-407   LEU-408  8.4 9.3 4.0 4.7 61.1 57.2 5.9
 LEU-408   LYS-409  4.8 5.8 1.0 -6.7 48.6 39.0 -32.0
 LYS-409   ASP-410  7.2 8.1 2.2 9.9 31.6 41.3 66.2
 ASP-410   ILE-411  8.7 9.6 -5.3 -7.2 128.3 123.9 -37.1
 ILE-411   MET-412  5.6 6.6 2.2 10.9 54.7 55.7 42.7
 MET-412   ARG-413  4.2 4.9 -3.4 4.6 130.1 140.9 3.5
 ARG-413   ASP-414  7.7 8.0 14.4 -3.7 34.6 44.4 57.6
 ASP-414   CYS-415  7.4 7.2 -12.2 8.0 123.6 116.9 -13.2
 CYS-415   PHE-416  3.6 3.4 -2.1 0.7 127.1 132.7 -11.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-442   ILE-443  5.0 5.3 16.4 -28.1 123.7 123.4 55.7
 ILE-443   ALA-444  4.1 4.4 12.5 4.0 53.2 61.7 24.6
 ALA-444   GLY-445  4.3 4.1 -3.7 24.9 124.2 118.8 36.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees