Spike Glycoprotein
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-311
ILE-312
11.5
11.4
-5.4
3.9
82.0
80.6
40.6
ILE-312
TYR-313
8.2
8.0
-1.5
-2.3
80.0
79.5
10.4
TYR-313
GLN-314
8.6
8.4
-4.0
7.5
90.7
85.3
0.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-596
VAL-597
4.0
3.8
-1.0
-1.0
122.2
119.6
10.5
VAL-597
ILE-598
4.0
3.9
3.7
5.8
114.1
113.2
-58.2
ILE-598
THR-599
6.1
6.2
-2.8
24.0
135.1
137.6
182.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-600
GLY-601
12.8
12.6
-177.2
171.1
46.7
67.9
22.4
GLY-601
THR-602
14.5
14.0
-24.3
-3.5
22.8
20.3
287.6
THR-602
ASN-603
13.9
13.9
-0.1
7.7
64.1
68.3
-37.0
ASN-603
THR-604
17.6
17.7
-17.5
5.2
76.8
84.1
-22.4
ASN-603
THR-604
17.6
17.7
-17.5
5.2
76.8
84.1
-22.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-603
THR-604
17.6
17.7
-17.5
5.2
76.8
84.1
-22.4
ASN-603
THR-604
17.6
17.7
-17.5
5.2
76.8
84.1
-22.4
THR-604
SER-605
17.1
17.4
9.5
3.4
64.1
67.2
49.1
SER-605
ASN-606
13.8
14.1
-4.8
0.7
98.7
101.5
-3.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-610
LEU-611
1.7
2.0
1.6
-0.4
29.2
30.7
11.7
LEU-611
TYR-612
1.0
1.2
1.6
-2.2
91.7
93.4
7.6
TYR-612
GLN-613
4.4
4.4
0.8
1.2
14.3
15.7
18.2
GLN-613
ASP-614
4.9
4.9
-1.8
-1.7
117.5
116.9
-24.1
ASP-614
VAL-615
7.0
7.0
-0.7
0.2
64.3
64.3
-14.2
ASP-614
VAL-615
7.0
7.0
-0.7
0.2
64.3
64.3
-14.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-614
VAL-615
7.0
7.0
-0.7
0.2
64.3
64.3
-14.2
ASP-614
VAL-615
7.0
7.0
-0.7
0.2
64.3
64.3
-14.2
VAL-615
ASN-616
9.0
9.2
-2.1
1.7
100.1
96.2
-32.2
ASN-616
CYS-617
10.9
11.2
-16.4
19.1
24.5
21.9
-16.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-641
VAL-642
12.8
13.2
4.4
-2.6
116.7
113.8
1.1
VAL-642
PHE-643
10.8
11.1
4.9
-1.6
170.0
172.2
-35.4
PHE-643
GLN-644
9.8
10.1
8.6
-6.7
119.7
116.2
5.7
GLN-644
THR-645
8.8
9.0
-1.0
-0.4
37.8
36.2
57.2
THR-645
ARG-646
6.0
6.3
-0.7
13.8
64.5
66.0
-105.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-647
GLY-648
1.7
2.1
4.7
2.4
37.5
33.6
95.4
GLY-648
CYS-649
4.4
4.6
2.3
-2.5
63.1
63.5
-13.6
CYS-649
LEU-650
6.1
6.2
2.3
-1.6
50.9
53.3
16.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-656
ASN-657
15.9
16.1
1.9
-2.4
4.3
1.5
-10.9
ASN-657
ASN-658
17.5
17.4
2.9
5.8
66.0
64.3
72.6
ASN-658
SER-659
18.6
18.6
5.9
-0.4
83.2
80.1
7.7
SER-659
TYR-660
16.6
16.6
-11.8
7.3
111.2
114.8
-5.1
SER-659
TYR-660
16.6
16.6
-11.8
7.3
111.2
114.8
-5.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-659
TYR-660
16.6
16.6
-11.8
7.3
111.2
114.8
-5.1
SER-659
TYR-660
16.6
16.6
-11.8
7.3
111.2
114.8
-5.1
TYR-660
GLU-661
17.3
17.0
-18.3
9.0
70.3
73.1
65.0
GLU-661
CYS-662
17.0
16.8
0.1
-4.7
53.9
48.5
-40.0
CYS-662
ASP-663
13.8
13.7
1.7
1.6
139.0
138.0
31.7
CYS-662
ASP-663
13.8
13.7
1.7
1.6
139.0
138.0
31.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
CYS-662
ASP-663
13.8
13.7
1.7
1.6
139.0
138.0
31.7
CYS-662
ASP-663
13.8
13.7
1.7
1.6
139.0
138.0
31.7
ASP-663
ILE-664
14.1
14.1
2.2
-0.8
107.7
106.9
-33.8
ILE-664
PRO-665
10.9
10.9
-1.3
1.1
128.8
126.6
-7.9
PRO-665
ILE-666
8.6
8.4
2.2
-1.2
68.7
67.7
4.1
PRO-665
ILE-666
8.6
8.4
2.2
-1.2
68.7
67.7
4.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-665
ILE-666
8.6
8.4
2.2
-1.2
68.7
67.7
4.1
PRO-665
ILE-666
8.6
8.4
2.2
-1.2
68.7
67.7
4.1
ILE-666
GLY-667
4.9
4.7
-1.5
3.4
39.5
40.5
-24.6
GLY-667
ALA-668
3.7
3.5
-0.5
-1.2
57.4
55.2
24.4
ALA-668
GLY-669
2.8
2.7
1.4
0.5
93.8
94.0
1.0
GLY-669
ILE-670
6.6
6.4
1.3
-4.4
31.2
32.8
-48.3
ILE-670
CYS-671
7.2
7.1
0.8
0.6
55.0
52.6
18.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-672
SER-673
10.1
10.0
1.5
-1.3
114.4
106.1
34.0
SER-673
TYR-674
13.2
13.3
0.2
-8.1
145.6
147.0
92.8
TYR-674
GLN-675
14.9
15.1
8.9
10.5
84.2
82.5
64.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-690
SER-691
18.1
18.6
-0.3
-2.4
94.6
91.5
-28.5
SER-691
ILE-692
14.6
15.1
2.2
-7.0
145.9
140.3
20.8
ILE-692
ILE-693
11.9
12.3
1.0
-2.0
135.0
137.8
16.0
ILE-693
ALA-694
12.6
12.8
2.1
5.9
137.9
136.1
-73.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees