Serine/threonine-Protein Kinase Pak 6

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-264   ASP-265  7.3 7.1 -8.8 -8.3 54.0 58.9 84.4
 ASP-265   PRO-266  7.0 6.9 -7.7 7.9 22.6 13.6 -13.4
 PRO-266   LYS-267  5.7 5.6 -11.8 14.0 48.5 53.1 3.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-296   ALA-297  1.4 1.4 4.4 3.9 100.8 102.6 -18.6
 ALA-297   ILE-298  3.8 4.0 -5.3 1.6 4.5 6.1 24.6
 ILE-298   ARG-299  3.8 4.0 0.6 -1.2 113.1 112.9 20.7
 ARG-299   GLN-300  6.9 7.0 2.8 -2.6 150.8 149.0 8.2
 GLN-300   MET-301  7.5 7.7 5.3 -12.3 121.7 121.8 -4.0
 MET-301   ASN-302  9.5 9.8 5.5 -7.4 151.6 153.5 -8.3
 ASN-302   LEU-303  10.8 11.0 -0.8 0.0 53.5 47.2 31.2
 LEU-303   GLN-304  10.3 10.5 9.9 6.9 124.6 125.8 -65.0
 GLN-304   GLN-305  12.8 13.0 -36.7 20.8 117.7 111.4 -16.1
 GLN-305   GLN-306  15.4 15.6 43.8 -40.8 56.1 62.9 46.3
 GLN-306   PRO-307  14.4 15.0 -9.8 -1.9 50.3 50.6 -2.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees