Gluconate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-111   GLY-112  5.6 5.5 -3.3 12.2 153.4 153.3 99.8
 GLY-112   ASP-113  5.8 5.9 3.2 -7.4 57.3 55.7 -77.1
 ASP-113   PHE-114  4.2 4.6 -8.6 0.9 131.3 133.1 -8.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-131   GLN-132  7.1 6.8 20.6 11.9 50.2 48.6 282.3
 GLN-132   MET-133  9.1 8.8 -3.9 1.2 162.8 160.5 -35.7
 MET-133   LEU-134  9.8 9.6 2.7 -6.5 62.8 55.5 -41.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees