Ubiquitin-Conjugating Enzyme E2 D3
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-16
PRO-17
4.3
3.7
14.5
13.3
156.2
160.9
-258.4
PRO-17
PRO-18
4.6
4.5
-22.6
-11.0
82.5
79.3
1.9
PRO-18
ALA-19
4.7
3.6
-28.7
37.1
82.5
72.4
57.1
ALA-19
GLN-20
8.4
7.4
-180.0
174.7
14.3
4.7
108.9
GLN-20
CYS-21
8.5
8.7
-7.6
26.0
42.8
58.6
-7.6
CYS-21
SER-22
5.6
5.8
-14.0
15.2
113.0
104.8
107.0
SER-22
ALA-23
5.5
6.3
1.0
-5.5
127.7
121.0
15.3
ALA-23
GLY-24
5.5
5.9
-15.1
-12.7
108.9
107.2
-97.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TRP-33
GLN-34
8.3
8.7
-0.3
5.1
53.3
54.8
-34.5
GLN-34
ALA-35
6.5
6.9
1.2
6.4
43.3
38.9
66.6
ALA-35
THR-36
4.3
4.6
-3.0
3.7
67.1
69.7
-19.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-52
THR-53
2.0
2.4
7.2
2.5
90.7
91.9
8.8
THR-53
ILE-54
4.1
4.4
2.9
-3.7
113.5
119.4
20.7
ILE-54
HIS-55
6.0
6.1
-4.3
-0.9
97.5
98.2
10.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-66
VAL-67
8.8
8.6
0.2
4.4
86.7
83.0
46.7
VAL-67
ALA-68
5.1
4.9
-1.4
-3.6
36.8
39.2
16.7
ALA-68
PHE-69
2.9
2.6
-3.6
4.9
95.6
95.1
22.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-76
ASN-77
14.8
14.8
8.8
-6.3
100.6
105.6
8.3
ASN-77
ILE-78
12.4
12.5
8.0
2.1
76.3
78.9
37.0
ILE-78
ASN-79
9.0
9.1
1.0
22.3
16.2
4.1
262.9
ASN-79
SER-80
8.4
8.3
-14.6
12.2
106.1
111.6
-84.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-103
LEU-104
3.3
3.1
-0.7
0.4
112.9
112.1
14.9
LEU-104
SER-105
5.9
5.9
-1.0
0.5
66.8
62.3
-11.9
SER-105
ILE-106
8.6
8.5
-4.2
1.7
25.1
28.8
30.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees