Type II Secretion System Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-222   SER-223  48.9 48.9 -3.4 3.6 76.4 76.2 71.5
 SER-223   PHE-224  48.0 48.1 5.3 -3.7 163.6 162.5 -257.3
 PHE-224   THR-225  48.7 48.7 0.1 -1.6 101.5 100.7 -507.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-226   ARG-227  49.7 49.5 -0.2 -0.8 115.3 112.3 -145.6
 ARG-227   LYS-228  48.3 48.1 -7.3 11.1 127.7 130.8 296.2
 LYS-228   PHE-229  51.3 51.2 1.8 1.1 36.4 35.2 9.7
 PHE-229   THR-230  51.2 51.3 -5.4 1.9 94.2 92.3 461.1
 THR-230   ILE-231  53.2 53.4 -13.5 13.7 103.5 102.7 -310.2
 ILE-231   GLU-232  51.4 51.3 0.8 -2.8 79.4 79.9 -49.7
 GLU-232   PRO-233  53.4 53.4 3.9 -2.7 66.4 67.6 478.9
 PRO-233   LEU-234  50.7 50.7 1.3 2.5 75.1 74.2 -117.1
 LEU-234   THR-235  50.4 50.2 -1.1 -2.0 170.6 168.0 -489.7
 THR-235   PRO-236  51.9 51.9 -2.3 -0.8 118.4 116.3 -2.7
 PRO-236   ILE-237  50.9 50.8 0.2 2.6 109.2 109.1 -215.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees