Protein Utr4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-31   PRO-32  18.0 18.6 23.1 10.1 157.3 157.8 -189.4
 PRO-32   ILE-33  18.9 19.0 -2.5 5.6 66.2 74.2 -42.5
 ILE-33   SER-34  18.1 18.8 -2.3 -26.7 47.5 55.6 79.0
 SER-34   PHE-35  16.4 15.9 19.6 3.6 70.0 66.8 43.4
 PHE-35   VAL-36  13.6 13.6 -3.9 -5.5 75.3 86.6 -8.9
 VAL-36   LYS-37  11.3 11.2 -6.7 16.2 18.8 20.0 -56.5
 LYS-37   GLU-38  11.4 11.5 -0.9 -26.1 69.8 53.2 114.7
 GLU-38   THR-39  11.9 11.3 19.4 2.9 65.1 68.2 -13.8
 THR-39   LEU-40  9.8 9.8 -0.7 2.5 108.6 111.6 -39.1
 LEU-40   PHE-41  7.1 7.0 0.5 1.6 130.3 129.4 25.1
 PHE-41   PRO-42  6.1 6.1 -1.5 2.3 53.6 48.0 -20.6
 PRO-42   TYR-43  5.3 5.2 4.0 2.2 59.8 63.8 7.2
 TYR-43   PHE-44  4.7 4.5 3.2 0.3 85.3 86.1 17.2
 PHE-44   THR-45  1.2 0.9 -5.1 4.0 31.8 27.1 -13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-99   VAL-100  3.4 3.7 1.6 7.4 59.2 61.8 37.7
 VAL-100   TRP-101  2.0 2.1 -2.4 -1.1 71.7 68.8 14.7
 TRP-101   ALA-102  2.0 1.7 -8.4 3.0 29.0 26.0 30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees