Periplasmic Oligopeptide-Binding Protein
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-272
SER-273
9.6
10.2
4.3
-14.0
112.6
113.4
-21.2
SER-273
MET-274
9.1
9.6
9.7
-62.7
161.5
166.2
161.3
MET-274
PRO-275
8.5
9.2
-3.4
13.3
52.8
61.8
-35.5
PRO-275
ILE-276
9.4
8.1
43.6
-17.5
116.5
109.7
-26.0
ILE-276
GLU-277
6.5
4.6
-0.7
11.2
23.4
30.0
-21.9
GLU-277
LEU-278
6.9
5.2
-19.7
30.1
81.3
90.8
-12.6
LEU-278
PHE-279
8.0
7.8
-25.0
-1.2
117.6
123.2
-68.6
PHE-279
GLN-280
6.2
6.1
-2.8
10.1
57.7
52.4
-12.5
GLN-280
LYS-281
5.6
4.4
-8.5
-12.7
54.2
55.1
21.3
LYS-281
LEU-282
8.5
7.4
2.4
3.2
50.5
60.7
-1.0
LEU-282
LYS-283
10.5
9.9
8.4
-2.2
76.6
75.0
4.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-293
PRO-294
7.3
6.7
-28.2
-1.1
116.1
116.6
-28.7
PRO-294
TYR-295
5.0
4.5
-3.2
13.4
119.3
133.8
16.6
TYR-295
LEU-296
2.4
1.9
24.0
8.2
62.9
59.8
40.6
LEU-296
CYS-297
0.3
0.7
-3.7
4.9
89.6
82.2
24.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-328
VAL-329
10.5
10.4
9.3
-22.4
98.2
92.4
15.2
VAL-329
ASN-330
7.6
7.5
-6.5
-34.8
150.0
142.9
-68.3
ASN-330
LYS-331
7.3
7.3
-17.4
-19.5
114.0
144.4
-56.1
LYS-331
VAL-332
6.0
7.8
-37.5
44.4
67.8
77.5
-22.4
VAL-332
LYS-333
3.1
8.4
-17.9
-77.0
84.5
58.9
159.1
LYS-333
ALA-334
3.6
5.1
-31.9
108.4
95.4
113.0
73.8
ALA-334
GLN-335
2.6
3.0
67.4
-18.0
153.1
116.3
-79.3
GLN-335
GLY-336
2.1
0.3
21.2
-10.5
135.9
130.0
-16.3
GLY-336
ASN-337
4.0
3.6
-5.6
2.0
43.4
26.8
8.8
ASN-337
MET-338
3.5
3.7
5.0
4.8
90.7
95.0
-26.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-510
TYR-511
5.2
5.4
-4.9
-3.2
119.2
122.2
-5.6
TYR-511
VAL-512
2.4
2.1
-19.1
12.8
99.0
94.7
4.5
VAL-512
ASN-513
1.5
1.5
7.7
-21.6
99.6
79.8
3.3
ASN-513
ALA-514
5.3
4.7
48.1
0.5
36.9
55.3
87.4
ALA-514
ARG-515
6.8
6.8
10.5
7.3
84.3
92.5
-4.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees