Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-193   LEU-194  14.4 14.1 1.6 1.3 169.7 171.3 -22.3
 LEU-194   ASN-195  13.6 13.8 23.5 -3.9 109.7 112.8 -59.7
 ASN-195   VAL-196  16.1 16.0 -14.7 21.2 42.5 48.1 -40.6
 VAL-196   ALA-197  14.5 14.5 6.5 -27.2 155.0 162.0 122.4
 ALA-197   SER-198  17.1 16.5 44.3 -26.0 121.7 118.7 -87.3
 SER-198   ILE-199  17.2 15.8 15.4 -22.6 115.6 114.4 -30.5
 ILE-199   PRO-200  13.5 12.2 -7.2 7.4 51.6 58.7 -4.3
 PRO-200   ARG-201  12.1 11.5 0.3 7.0 64.3 64.2 10.6
 ARG-201   ASP-202  10.6 11.3 -2.9 1.6 86.4 87.9 -16.5
 ASP-202   ILE-203  7.1 8.0 5.5 -15.5 55.6 59.3 -39.0
 ILE-203   PHE-204  7.1 5.8 10.6 20.2 12.4 8.9 165.6
 PHE-204   GLU-205  8.1 7.5 -12.9 9.2 118.9 127.6 9.0
 GLU-205   ALA-206  5.9 5.9 -10.0 13.0 96.8 92.7 18.9
 ALA-206   GLU-207  2.9 2.5 -11.3 6.8 136.6 126.2 -16.1
 GLU-207   LEU-208  5.5 4.8 -5.6 7.7 159.1 167.0 5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-226   PHE-227  6.0 6.0 -23.7 22.2 33.6 24.6 18.4
 PHE-227   GLU-228  3.5 4.0 -22.8 21.4 56.5 52.7 27.7
 GLU-228   LEU-229  2.9 3.2 -2.9 15.6 67.1 74.7 -26.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-258   LYS-259  6.6 6.7 -9.9 -2.7 50.2 59.6 14.9
 LYS-259   PHE-260  7.5 7.0 2.5 -1.2 158.6 163.0 -19.9
 PHE-260   TYR-261  7.2 6.8 -14.0 11.7 54.4 55.6 -21.7
 TYR-261   ARG-262  7.1 7.1 -13.3 13.5 54.4 47.1 -29.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-265   ARG-266  8.2 8.5 6.3 13.6 113.3 113.2 -25.9
 ARG-266   LYS-267  11.5 11.7 11.8 -13.3 150.0 173.8 13.1
 LYS-267   GLU-268  10.8 10.8 38.7 -24.7 128.4 114.8 -7.7
 GLU-268   ILE-269  9.4 9.5 -41.1 41.3 55.1 53.4 51.4
 ILE-269   GLU-270  6.1 6.1 -13.6 15.6 39.6 42.5 -14.5
 GLU-270   VAL-271  5.1 4.8 13.1 -16.4 111.4 106.1 2.8
 VAL-271   ASN-272  1.6 1.2 -7.3 10.0 43.8 47.7 -21.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees