Hypothetical Transcriptional Regulator In Qaca 5'Region

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-58   SER-59  2.6 2.6 -28.4 20.5 28.2 21.6 24.0
 SER-59   LYS-60  5.3 5.1 -16.9 16.7 45.4 53.5 12.2
 LYS-60   TRP-61  5.1 6.0 27.3 -48.9 108.6 113.6 29.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-87   THR-88  12.8 13.3 16.0 -24.1 81.6 67.5 -11.6
 THR-88   THR-89  13.2 12.9 32.0 -0.7 113.8 102.5 -33.4
 THR-89   GLU-90  10.4 9.7 -156.5 -48.5 7.0 45.0 574.3
 GLU-90   TYR-91  10.6 10.4 10.6 -48.8 105.8 124.9 -986.0
 TYR-91   TYR-92  14.4 7.0 174.2 -173.6 106.6 120.4 50.8
 TYR-92   TYR-93  14.3 5.0 -78.9 6.5 76.9 71.9 183.1
 TYR-93   PRO-94  10.9 7.6 -165.8 8.9 37.5 58.8 393.5
 PRO-94   LEU-95  12.3 10.3 11.0 -31.5 148.0 169.2 56.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-109   ASN-110  5.8 6.6 0.5 5.3 132.2 154.3 2.3
 ASN-110   SER-111  9.4 9.3 19.5 -5.0 129.6 137.6 -38.6
 SER-111   ILE-112  9.8 9.1 21.6 -24.4 143.7 127.5 -1.1
 ILE-112   ASN-113  6.8 5.5 -46.0 54.6 49.9 61.9 4.5
 ASN-113   GLU-114  7.8 6.1 -78.2 30.4 54.9 25.7 118.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-116   ASN-117  6.0 4.0 9.0 20.4 50.9 61.7 44.6
 ASN-117   LYS-118  8.7 7.1 11.7 4.1 24.5 21.1 48.6
 LYS-118   LEU-119  9.9 7.4 -27.6 15.8 130.3 131.1 -25.3
 LEU-119   GLU-120  6.3 4.0 15.5 -2.7 106.9 96.3 2.6
 LEU-119   GLU-120  6.3 4.0 15.5 -2.7 106.9 96.3 2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-119   GLU-120  6.3 4.0 15.5 -2.7 106.9 96.3 2.6
 LEU-119   GLU-120  6.3 4.0 15.5 -2.7 106.9 96.3 2.6
 GLU-120   ASN-121  6.4 6.2 -18.9 2.4 44.4 41.5 43.8
 ASN-121   LYS-122  9.6 8.9 -8.0 19.4 21.7 20.3 -41.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees