Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-105   PHE-106  5.3 5.4 7.9 -4.7 40.5 41.7 37.1
 PHE-106   MET-107  3.6 3.6 3.5 -0.3 97.2 97.3 20.8
 MET-107   SER-108  0.7 0.5 6.7 -14.2 162.0 165.1 166.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  6.9 6.9 5.5 -9.4 135.6 134.3 82.0
 SER-217   LYS-218  3.6 3.7 13.9 -21.8 109.6 110.2 66.6
 LYS-218   GLY-219  4.2 4.0 -3.7 4.8 24.4 19.2 1.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-251   ASN-252  5.6 5.8 4.9 8.4 74.2 71.3 92.4
 ASN-252   LYS-253  9.1 9.3 -8.0 1.3 154.8 151.7 -149.3
 LYS-253   TRP-254  8.2 8.3 8.4 -9.8 90.5 90.9 45.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees