Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-104   PHE-105  11.1 11.0 3.0 -8.2 145.9 146.7 -8.2
 PHE-105   MET-106  12.3 12.0 10.5 -25.5 121.8 124.9 23.5
 MET-106   THR-107  8.8 8.6 6.0 5.5 41.8 46.4 26.5
 THR-107   LEU-108  7.3 6.1 27.1 -12.4 112.9 118.3 -32.0
 LEU-108   GLY-109  4.1 2.6 -13.4 24.9 135.6 137.2 16.0
 GLY-109   ILE-110  2.8 2.2 -54.8 27.8 60.3 70.1 39.3
 ILE-110   SER-111  5.0 4.6 -7.6 -3.3 58.3 67.3 11.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  12.9 13.0 26.8 -34.9 101.3 91.9 -11.7
 GLY-209   LEU-210  11.4 10.5 -4.8 24.1 74.8 62.2 -25.0
 LEU-210   ILE-211  8.0 7.2 4.5 15.5 155.2 153.9 -50.6
 ILE-211   ASP-212  7.5 7.6 -175.9 144.8 68.0 44.0 22.5
 ASP-212   SER-213  4.6 4.6 119.4 -83.3 73.6 60.0 55.2
 SER-213   LYS-214  4.7 3.8 -5.7 7.4 76.7 72.5 17.3
 LYS-214   GLY-215  3.6 3.3 27.8 -14.9 41.6 42.6 26.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees