Undecaprenyl Pyrophosphate Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-93   ASP-94  5.0 5.9 -17.7 5.4 65.2 85.4 -11.8
 ASP-94   SER-95  7.1 7.6 -32.6 34.1 115.7 127.7 -23.9
 SER-95   GLU-96  10.3 10.9 -16.9 42.7 163.9 167.1 197.7
 GLU-96   VAL-97  9.3 9.3 -19.8 -2.9 108.1 108.0 -21.7
 VAL-97   LYS-98  7.4 7.3 5.5 -7.4 78.9 82.4 18.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-107   ARG-108  3.0 3.0 1.2 1.3 73.3 72.5 33.7
 ARG-108   ILE-109  3.6 3.3 -4.6 6.7 102.4 103.3 14.2
 ILE-109   ILE-110  4.7 4.2 1.5 -2.8 105.3 105.2 11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-115   PHE-116  13.0 12.8 -13.4 11.9 76.9 70.6 3.6
 PHE-116   ASN-117  9.8 9.3 -6.9 -6.5 31.1 32.9 78.1
 ASN-117   SER-118  8.1 7.8 4.6 -0.9 80.3 77.6 22.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-137   THR-138  5.3 5.4 6.1 -0.4 39.7 39.6 37.9
 THR-138   LEU-139  3.5 3.5 -0.8 -5.4 97.8 96.4 20.5
 LEU-139   ASN-140  0.7 1.0 2.9 1.2 52.5 49.8 22.6
 ASN-140   ILE-141  2.9 2.6 0.8 -0.7 70.8 69.0 -20.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees