Calpain 9

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-187   LYS-188  3.7 3.0 13.7 -1.0 110.0 104.6 -9.9
 LYS-188   GLY-189  6.7 6.2 28.5 53.5 130.2 134.3 -94.1
 GLY-189   GLY-190  8.8 9.1 -125.8 -33.4 42.6 50.5 311.2
 GLY-190   SER-191  5.8 10.2 15.1 8.3 149.6 119.3 -30.9
 SER-191   ALA-192  5.0 9.5 -140.5 -37.7 84.0 36.1 -218.7
 ALA-192   ILE-193  3.1 8.2 -164.2 -1.1 43.8 111.9 83.0
 ILE-193   GLU-194  1.9 5.9 89.8 -11.5 71.5 70.1 68.0
 GLU-194   ALA-195  3.4 9.0 161.4 128.1 62.4 44.8 -65.9
 ALA-195   MET-196  1.8 9.2 50.1 -40.2 132.2 82.3 3.1
 MET-196   GLU-197  3.0 5.8 157.4 -5.2 115.0 141.3 -163.7
 GLU-197   ASP-198  4.8 7.1 -137.9 19.8 130.6 55.9 33.6
 ASP-198   PHE-199  6.6 6.0 154.3 -3.7 89.7 57.6 75.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-202   VAL-203  7.2 6.2 13.1 60.6 81.2 96.3 -8.2
 VAL-203   ALA-204  5.9 4.2 6.3 -19.4 117.1 67.4 -11.0
 ALA-204   GLU-205  3.4 2.6 -20.4 -14.3 44.1 45.8 51.6
 GLU-205   THR-206  4.9 3.8 -1.0 -8.5 108.8 121.7 -11.0
 THR-206   PHE-207  8.1 7.4 -4.3 -4.7 40.0 47.7 15.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees