Peptidyl-Prolyl Cis-Trans Isomerase Slyd

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-64   PRO-65  9.9 10.0 -7.0 0.1 47.2 55.4 41.7
 PRO-65   HIS-66  11.6 11.6 6.2 -15.0 159.3 166.3 46.8
 HIS-66   ASP-67  12.0 12.2 -7.2 14.4 83.4 79.5 -18.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-121   ALA-122  4.6 4.9 5.9 -2.9 121.6 124.4 -7.1
 ALA-122   GLY-123  7.8 8.1 -4.3 1.1 90.7 86.9 22.4
 GLY-123   LYS-124  8.3 8.4 2.1 11.3 97.9 95.2 -32.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees