Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-107   LEU-108  7.8 7.6 12.5 -7.3 110.9 114.9 -30.9
 LEU-108   GLY-109  4.2 4.0 -2.7 14.9 137.7 136.1 26.1
 GLY-109   ILE-110  1.5 1.2 -44.1 23.5 62.3 66.5 45.0
 ILE-110   SER-111  3.4 3.1 -6.7 -3.7 59.0 66.2 19.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-207   GLY-208  10.9 11.1 -8.9 -20.9 21.4 31.2 112.0
 GLY-208   GLY-209  11.3 11.3 23.0 -35.5 99.2 89.8 -13.3
 GLY-209   LEU-210  10.0 8.9 10.5 10.0 105.0 120.7 -39.1
 LEU-210   ILE-211  6.6 5.9 2.3 6.6 157.2 156.1 -26.4
 ILE-211   ASP-212  5.8 6.3 -156.9 139.9 69.3 47.1 -6.3
 ASP-212   SER-213  2.9 3.4 124.9 -89.6 71.5 62.2 76.7
 SER-213   LYS-214  4.0 3.8 -6.1 7.5 77.8 74.5 21.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees