Groel

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-189   VAL-190  6.1 6.2 2.7 2.0 118.3 118.0 -5.7
 VAL-190   GLU-191  4.6 4.7 0.3 -2.3 100.7 103.7 0.9
 GLU-191   GLY-192  3.0 3.0 -122.6 126.7 147.6 145.2 105.4
 GLY-192   MET-193  2.2 2.1 -0.7 1.4 96.4 96.9 1.4
 MET-193   GLN-194  2.4 2.4 -2.3 1.3 156.5 157.2 -3.5
 GLN-194   PHE-195  4.2 4.2 -3.2 3.1 90.8 91.6 0.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-371   LEU-372  5.8 5.8 0.7 -0.8 53.0 52.2 -2.0
 LEU-372   ALA-373  3.9 3.9 0.6 2.4 67.9 67.7 4.5
 GLY-374   GLY-375  5.0 4.9 0.1 -0.7 109.4 111.0 -0.3
 GLY-375   VAL-376  1.4 1.4 1.8 -0.3 169.0 171.5 -4.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees