Antigen Peptide Transporter 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-564   PRO-565  9.6 9.5 -3.6 -6.4 31.2 36.8 52.6
 PRO-565   LEU-566  9.3 9.1 8.8 0.4 121.0 128.4 -23.1
 LEU-566   LEU-567  12.5 12.0 14.0 5.7 163.2 155.2 -115.7
 LEU-567   PHE-568  11.8 10.8 108.6 -7.8 128.0 142.0 -497.3
 PHE-568   GLY-569  15.3 12.6 4.2 1.6 131.1 147.7 -59.3
 GLY-569   ARG-570  16.7 12.4 152.2 66.3 141.5 90.5 673.4
 ARG-570   SER-571  13.7 13.9 -178.8 -70.4 88.7 91.8 51.0
 SER-571   PHE-572  11.6 11.4 -7.2 15.5 125.4 119.4 23.7
 PHE-572   ARG-573  8.8 8.5 -8.0 3.3 62.9 59.8 -19.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-577   TYR-578  5.4 5.2 -62.4 38.2 76.8 72.4 27.3
 TYR-578   GLY-579  8.6 8.7 6.1 -2.3 99.8 117.4 -35.1
 GLY-579   LEU-580  11.1 10.7 4.8 3.1 46.7 67.4 30.3
 LEU-580   THR-581  9.7 9.2 -1.2 -1.1 147.2 136.7 7.7
 THR-581   ARG-582  11.8 12.2 61.9 -81.4 42.7 19.7 -83.4
 ARG-582   THR-583  9.1 10.0 13.3 2.1 98.2 82.8 6.9
 THR-583   PRO-584  5.7 6.8 1.3 -8.7 81.5 84.5 -16.8
 THR-583   PRO-584  5.7 6.8 1.3 -8.7 81.5 84.5 -16.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-583   PRO-584  5.7 6.8 1.3 -8.7 81.5 84.5 -16.8
 THR-583   PRO-584  5.7 6.8 1.3 -8.7 81.5 84.5 -16.8
 PRO-584   THR-585  3.1 3.9 4.1 1.4 118.1 124.9 -11.2
 THR-585   MET-586  1.8 1.8 -4.9 -3.2 131.0 129.4 -26.5
 MET-586   GLU-587  3.9 2.8 4.0 3.8 56.7 63.9 36.4
 GLU-587   GLU-588  6.2 5.4 -9.0 4.4 142.0 147.6 -31.7
 GLU-588   ILE-589  4.5 4.4 -0.7 8.2 134.5 135.8 45.8
 ILE-589   THR-590  2.4 1.9 -1.8 1.6 121.2 115.6 -8.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-611   GLU-612  14.0 14.1 3.3 0.1 123.9 112.5 0.0
 GLU-612   VAL-613  15.1 15.4 -16.2 -40.6 16.9 6.5 380.8
 VAL-613   GLY-614  15.0 14.4 -1.1 154.5 77.4 79.5 -406.3
 GLY-614   GLU-615  18.5 17.4 -168.7 115.4 124.7 41.8 523.2
 GLU-615   THR-616  19.5 18.2 38.2 148.6 93.9 123.1 -809.9
 THR-616   GLY-617  18.4 14.8 58.8 -38.9 106.7 118.2 -83.1
 GLY-617   ASN-618  21.8 13.3 60.8 61.6 168.7 145.7 1572.6
 ASN-618   GLN-619  20.8 15.7 -168.4 -28.9 73.5 94.4 -1103.2
 GLN-619   LEU-620  18.5 17.2 -134.7 -16.7 80.4 90.4 193.0
 LEU-620   ALA-621  14.8 14.1 20.7 0.5 166.8 166.5 -136.7
 ALA-621   VAL-622  13.5 13.7 -3.4 11.0 84.2 68.3 -33.7
 VAL-622   GLY-623  10.5 11.1 -8.3 -11.5 110.5 107.7 -43.9
 GLY-623   GLN-624  8.6 9.1 3.4 7.2 4.6 9.7 51.9
 GLN-624   ARG-625  9.6 9.6 -1.4 7.3 110.1 101.0 -9.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-633   LEU-634  5.0 4.9 -0.7 5.9 114.6 114.4 17.8
 LEU-634   ILE-635  5.1 5.0 6.2 -0.6 17.0 19.2 39.7
 ILE-635   ARG-636  4.8 5.0 4.1 -0.5 77.6 81.3 35.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees