T7 RNA Polymerase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-539
CYS-540
18.1
17.7
-9.3
15.9
20.0
48.4
-51.9
CYS-540
SER-541
17.9
18.6
-52.5
77.7
53.9
28.9
-236.6
SER-541
GLY-542
15.8
16.1
52.7
-75.6
152.7
142.1
228.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-722
SER-723
23.4
21.2
-18.1
67.9
75.7
65.6
-225.3
SER-723
ALA-724
19.9
17.7
-37.8
-28.5
23.1
13.8
646.0
ALA-724
VAL-725
17.5
16.7
-27.7
86.8
76.1
58.9
-339.1
VAL-725
HIS-726
16.6
16.0
2.8
-14.6
123.5
94.9
-47.2
HIS-726
TRP-727
13.1
12.4
-36.6
4.5
68.7
69.4
127.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-729
PRO-730
8.5
8.3
5.4
5.7
85.4
97.9
-30.3
PRO-730
ASP-731
8.6
8.5
-28.4
18.0
86.4
93.5
68.7
ASP-731
GLY-732
5.2
5.1
-21.4
16.3
147.1
154.3
-53.7
GLY-732
PHE-733
4.1
4.2
9.6
-2.5
80.5
75.9
22.4
PHE-733
PRO-734
4.0
4.0
-18.6
19.2
122.4
128.0
38.0
PRO-734
VAL-735
6.6
6.1
42.1
-58.7
108.0
108.1
41.8
PRO-734
VAL-735
6.6
6.1
42.1
-58.7
108.0
108.1
41.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-734
VAL-735
6.6
6.1
42.1
-58.7
108.0
108.1
41.8
PRO-734
VAL-735
6.6
6.1
42.1
-58.7
108.0
108.1
41.8
VAL-735
TRP-736
10.2
9.6
22.4
-17.8
39.6
47.8
20.0
TRP-736
GLN-737
12.6
12.7
38.0
14.1
107.7
118.8
-225.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-812
SER-813
9.6
9.9
-42.3
25.7
145.4
162.7
-113.7
SER-813
PHE-814
8.2
8.4
-64.6
57.7
93.2
88.3
50.7
PHE-814
GLY-815
4.5
4.7
-25.7
20.9
141.4
157.7
-52.8
GLY-815
THR-816
2.1
2.9
-5.9
-29.0
91.9
91.0
-46.4
THR-816
ILE-817
1.5
1.1
-16.9
18.7
168.6
165.5
46.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-822
ASN-823
8.7
8.4
-23.5
19.5
21.5
14.1
32.6
ASN-823
LEU-824
9.4
8.9
-10.2
-14.8
44.7
55.0
208.9
LEU-824
PHE-825
6.8
6.2
-6.0
8.1
79.5
94.7
22.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-839
ASP-840
18.3
15.3
-25.8
-24.4
75.1
88.6
76.5
ASP-840
VAL-841
19.5
17.3
-10.2
20.5
107.0
108.7
71.0
VAL-841
LEU-842
16.6
15.8
-34.2
26.5
113.9
133.0
4.6
LEU-842
ALA-843
19.2
19.1
-29.4
10.6
158.5
155.1
-202.0
ALA-843
ASP-844
20.4
19.3
-21.0
17.2
124.7
120.9
-71.6
ASP-844
PHE-845
16.7
15.6
3.2
7.4
78.6
65.7
62.8
PHE-845
TYR-846
16.4
15.7
-19.1
5.2
133.4
153.9
-129.0
TYR-846
ASP-847
19.6
18.2
9.0
-5.1
27.8
42.3
36.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees