Lactoferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-89   THR-90  2.2 2.6 -37.3 5.8 58.9 62.2 24.4
 THR-90   HIS-91  1.0 1.6 -44.2 -10.9 17.2 10.6 110.5
 HIS-91   TYR-92  1.4 2.1 15.3 1.2 90.7 95.2 16.3
 TYR-92   TYR-93  4.5 5.1 3.4 -3.1 147.0 151.4 9.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-247   ALA-248  9.3 9.3 -6.0 8.2 77.5 73.8 -2.8
 ALA-248   ARG-249  6.5 6.5 -5.3 17.0 16.8 7.6 -9.0
 ARG-249   VAL-250  5.4 5.5 -0.1 35.2 92.7 94.3 12.4
 VAL-250   PRO-251  1.6 1.8 -50.4 -20.3 37.9 27.9 94.0
 PRO-251   SER-252  1.9 2.1 39.3 -11.4 105.0 108.9 -2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees