Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-114   GLU-115  4.5 3.2 9.2 2.2 133.8 131.7 -30.8
 GLU-115   VAL-116  5.8 4.8 -5.8 -3.6 57.2 67.2 34.8
 VAL-116   VAL-117  2.4 1.9 0.1 12.1 59.1 47.3 25.0
 VAL-117   ILE-118  2.3 2.8 -10.8 -1.4 90.2 89.8 5.2
 ILE-118   GLU-119  5.9 6.1 -3.6 4.3 32.3 36.6 -14.6
 GLU-119   ARG-120  6.2 6.6 1.3 -1.2 88.7 88.0 8.3
 ARG-120   LEU-121  5.9 6.8 -2.1 14.8 126.9 127.9 24.6
 LEU-121   SER-122  8.1 8.9 -12.9 6.6 89.1 80.8 11.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-165   ARG-166  1.7 2.7 -7.7 4.4 92.7 94.9 11.8
 ARG-166   GLU-167  4.9 4.0 6.7 8.4 153.7 148.4 -31.4
 GLU-167   GLN-168  5.8 4.8 -23.2 -5.1 58.4 71.3 42.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees